ELIXIR CZ (LM2023055)

Features and tasks developed solely from the support of ELIXIR CZ research infrastructure, MŠMT Grant No.: LM2023055 (based on the publicly available changelog and related changes in DSW repositories):

• 3.19.0 (3. 1. 2023)
  • Indications computation
  • Minor UI improvements and fixes
• 3.19.1-frontend (6. 1. 2023)
  • Fix narrow panel in project import view
• 3.19.2-backend (12. 1. 2023)
  • Fix synchronization of locales from Registry
• 3.19.1-tools (15. 1. 2023)
  • Fix path serialization in TDK
• 3.19.2-tools (17. 1. 2023)
  • Fix version identification in tools
• 3.19.3-backend (17. 1. 2023)
  • Fix importing KM if file contains .ttl
• 3.20.0 (7. 2. 2023)
  • Document template editor (idea)
  • Mark document template as legacy
  • Various UI improvements and fixes
• 3.20.1-frontend (8. 2. 2023)
  • Fix document template detail in registry
• 3.20.1-tools (9. 2. 2023)
  • Fix creating document template draft from TDK
• 3.20.2-tools (10. 2. 2023)
  • Fix updating template.json using TDK
  • Fix retrieving app config and questionnaire for documents
• 3.20.2-frontend (10. 2. 2023)
  • Fix based on when creating new document template
• 3.20.3-frontend (21. 2. 2023)
  • Fix vulnerabilities in the base image
• 3.21.0 (7. 3. 2023)
  • RO-Crate import/export
  • Warnings on imports
  • Various optimizations and UI fixes
• 3.22.0 (4. 4. 2023)
  • Added the possibility to set a knowledge model as deprecated so researchers cannot use it to create new projects.
  • Added phase editor to KM Editor (similar to Tag editor).
  • Renamed Template tab to Settings in the document template editor to make it consistent with KM Editor or Project.
  • Added link to selected project in document template editor preview.
  • Position in the questionnaire is now remembered when switching tabs in the project (such as going to preview and back to the questionnaire).
  • Warnings tab in the project is now automatically closed when the last one is resolved.
  • Projects are no longer filtered by current user if the user is admin.
  • Added information about a version of all components in the About modal.
  • Improved add button labels in various forms to make it easier to understand what they add.
  • Added experimental weasyprint step in document templates for better PDF documents generation.
  • User details are now updated in the menu after editing your own profile.
  • Added link to the DSW Registry from locale detail.
  • Fixed visible first chapter in KM Editor preview when deleted.
  • Fixed inconsistent update label for badge and action for KM migration.
  • Fixed failing to publish knowledge models due to wrong event squashing in some cases.
  • Fixed a visual bug in the project selection dropdown in the document template editor preview.
  • Fixed text overflow for long questions/answers in the project import view.
  • Fixed image previews in the document template editor.
  • Fixed downloading document template with DSW TDK.
  • Fixed dropdown menu separators in list views.
  • Added support for RO-Crates (RO-Crate Importer and RO-Crate Template)
  • Improved default English locale metadata.
• 3.22.1-be/fe (11. 4. 2023)
  • Fixed database migration of existing KM editors after 3.22 that could cause unexpected KM editor version or missing metadata (such as readme).
  • Fixed publish process in KM editor and Document Template Editor that could be confusing after 3.22 changes.
  • Fixed deleting KM editor when it is migrating.
• 3.22.2-backend (12. 4. 2023)
  • Fixed an issue that sometimes caused suggesting the same knowledge model multiple times when creating a new project or knowledge model editor.
• 3.22.3-backend (13. 4. 2023)
  • Fixed the selected phase in projects when migrating from a knowledge model without phases to a knowledge model with phases.
• 3.23.0 (2. 5. 2023)
  • Added sort by created to document template list.
  • Improved progress bar in project migration.
  • The warnings tab in the knowledge model editor is now automatically closed when the last one is resolved.
  • Improved form actions to make them more visible when forms change.
  • Fixed project indication calculation after import or project migration.
  • Fixed double error message when deleting failed in list views.
  • Fixed phase in a questionnaire after project migration if the phase no longer exists.
  • Fixed dropdown menus in the sidebar when the page was scrolled.
  • Fixed knowledge model export from the knowledge model list.
• 3.23.3-backend (14. 6. 2023)
  • Fixed generating documents that contain more than one whitespace in the filename.
• 3.24.0 (30. 5. 2023)
  • List views (such as project list or knowledge model list) have been reworked so that only the results are reloaded instead of the whole page. Therefore, the search field should not loose focus when typing slowly.
  • Improved information on detail pages (such as knowledge model or document template).
  • Fixed document generation when there were inconsistent replies after questionnaire migration.
  • Fixed icon alignment in questionnaire import.
  • Fixed color transition for menu icons.
• 3.24.1-backend (14. 6. 2023)
  • Fixed generating documents that contain more than one whitespace in the filename.
• 3.24.1-frontend (6. 7. 2023)
  • Fixed change logo button in settings (affects only instances where this is enabled).
• 3.25.0 (4. 7. 2023)
  • Added Terms of Service and/or Privacy agreement confirmation during SSO signup when they are set.
  • Preview in KM Editor now opens on current question (corresponding answers are pre-selected if the question is nested).
  • Improved phase selection in questionnaire and phase description is now used.
  • Improved question tags selection when creating a new project to make it more clear which questions will be used.
  • Added support for uploading more files in document template editor.
  • Fixed links from TODOs or comments to questions in collapsed items (they now expand).
  • Fixed SMTP configuration without username and password for authentication.
  • Added robots.txt to client and server to prevent indexing of the applications.
• 3.25.1-frontend (6. 7. 2023)
  • Fixed change logo button in settings (affects only instances where this is enabled).
• 3.25.2-frontend (18. 7. 2023)
  • Fixed preview of item questions in KM Editor that could sometimes cause two items to have the same value when filling them in.
• 3.25.1-backend (19. 7. 2023)
  • Fixed user activation when logging in for the first time using OpenID, and no Terms of Service or Privacy Policy were set.
• 3.25.3-frontend (10. 8. 2023)
  • Fixed the knowledge model filter on the project list.
• 3.26.0 (1. 8. 2023)
  • Added explicit info when there are no questions in a chapter.
  • Comments tab is now highlighted when comments are open on a specific question.
  • Fixed cursor on radio input in the document template format selection.
  • Fixed file upload UI in the document template editor.
  • Fixed description in Markdown inputs.
  • Fixed deleting queued documents (the dropdown menu was sometimes disappearing).
  • Fixed link to document template development from the Data Steward dashboard.
  • Fixed displaying of alphabetical identifiers for answers, choices, and items.
  • Default role was changed to Researcher when running a fresh instance.
  • Upgraded Bootstrap to 5.3.0 in frontend.
• 3.26.1-frontend (10. 8. 2023)
  • Fixed the knowledge model filter on the project list.
• 3.27.0 (5. 9. 2023)
  • Added explicit info when there are no questions in an item.
  • Fixed filters on list views when changing filters while items are loading.
  • Fixed project tags filter when removing last tag.
  • Fixed Life Science Login badge.
• 3.28.0 (3. 10. 2023)
  • Added a button to add another sibling entity in the navigation tree in the knowledge model editor.
  • Question tags are now preselected when creating a project migration if they were used in the original project.
  • Error is now shown in the user create form when the email is already used.
  • Improve the performance of knowledge model editors and projects.
  • Fixed selecting of knowledge model on project creation after the selected knowledge model was removed.
  • Fixed user filter on the project list after unselecting a user and selecting another one.
  • Fixed preview of files with incompatible character encoding.
  • Fixed questionnaire navigation tree showing non-desirable questions when they should be hidden.
  • Fixed minor issues in document template selection when creating a new document.
  • Fixed integration in KM editor showing deleted questions are used.
  • Changed the default user role from data steward to researcher when a new wizard instance is started.
• 4.0.0 (13. 11. 2023)
  • Integration response is now shown as plain text in the questionnaire version history, so the raw Markdown code is not visible there.
  • Added focus to the first input field when adding a new or opening an existing entity in the KM editor.
  • Fixed non-desirable follow-up questions in questionnaires so there is no empty box.
  • Fixed warnings for deleted entities in the KM editor.
  • Fixed watch mode termination in TDK in some cases.
  • Fixed creating templates with brackets in name in TDK.
• 4.0.1-frontend (14. 11. 2023)
  • Fixed OpenID login buttons.
  • Fixed favicon.
• 4.0.1-backend (14. 11. 2023)
  • Fixed duplicate documents in document lists.
• 4.0.1-tools (12. 12. 2023)
  • Fixed retry mechanism for command queue used in workers.
• 4.1.0 (5. 12. 2023)
  • Fixed primary color that didn't work correctly on some elements after 4.0 rework.
  • Fixed Jinja2 template error reporting when generating documents.
  • Fixed pagination after deleting last items in listings.
• 4.1.1-backend (11. 12. 2023)
  • Fixed upgrading the Document Template metamodel version for Document Template Editors.
• 4.1.1-tools (12. 12. 2023)
  • Fixed retry mechanism for command queue used in workers.
• 4.1.1-frontend (18. 12. 2023)
  • Fixed links to questions in questionnaires.

Aside the direct development, the operations of the following services were supported from the project:

• ideas.ds-wizard.org
• localize.ds-wizard.org